Pakistan's 1st Ever
Exclusive Workshop
Mastering Single-Cell RNA-Seq
For the first time in Pakistan, Omics Nexus brings an exclusive, hands-on training in Single-Cell RNA Sequencing (scRNA-seq). The future of biology is no longer bulk—it is cellular resolution biology.
Why This Workshop?
This workshop is designed to equip you with the skills to analyze complex biological systems at the single-cell level, using real-world datasets and industry-standard tools. Move beyond theoretical knowledge and start executing cutting-edge computational pipelines.
Key Takeaways
- Data Generation: Master the experimental workflow from tissue to sequencing and understand single-cell biology.
- Preprocessing: Learn to run Cell Ranger and generate high-quality gene expression matrices from raw FASTQ files.
- End-to-End Analysis: Use Scanpy for QC, normalization, log transformation, and identification of Highly Variable Genes (HVGs).
- Interpretation: Perform UMAP visualization, identify marker genes, and handle cell-type annotation (manual and automated).
- Differential Expression: Analyze DEGs across different cell types and complex phenotypes.
Workshop Structure
Day 1
Foundations & Data Generation
- Introduction to Single-Cell RNA-Seq technology
- Experimental workflow (from tissue → sequencing)
- Running Cell Ranger
- Generating gene expression matrix
Day 2
Data Processing & Core Analysis
- Data upload and handling
- Quality control (QC)
- Normalization & log transformation
- Identification of Highly Variable Genes (HVGs)
- Principal Component Analysis (PCA)
Day 3
Advanced Analysis & Biological Interpretation
- UMAP visualization & clustering
- Marker gene identification
- Cell-type annotation (manual + automated)
- Differential gene expression (DEGs across cell types & phenotypes)
Event Details
Join the priority waitlist today
Date
12, 13, 14 June 2026
Investment & Price Plan
Early Bird Discount
4000 PKR
Normal Fee
5000 PKR
International
20 USD